Scaffold Ga0208362_1000234

Overview

Basic Information

• Taxon OID: 3300020558
• Scaffold ID: Ga0208362_1000234
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 13OCT2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18871
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (65.85%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004789	Metagenome / Metatranscriptome	423	Y
F007028	Metagenome / Metatranscriptome	359	Y
F099177	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208362_100023414	F007028	GAG	MPKITKTAMEQSMDSPLDQVVNLLSNEISLTSSPIVICGVNRKINIGNFENIDVYAGVTIPLHGVSFEDKQALTAAVEEAVAYGFSLASKETGERYMLIKESQQGTK
Ga0208362_10002342	F004789	GGAG	MSSVGPTINPVEKWCWVFCSSCNRCQDKGRYTKCNGCSGRYDPELKIKVDNEDFCDCKNGILRWKTQQGRLVMTKFNSNPFKGSVRYQKKTEDERDWDSYVKDMREKMDNPNWNPITIYE
Ga0208362_10002348	F099177	GGA	MSSYKEQYYSLQENEMQDLIDKAKKGSGHHQEELLKVFSNFLTKYTSLLYYSKFNLNDYDIRRFISLFIKDPGTRFALMKNKLNQNNTRVINECMRGINYMARRYGDEEDIRQTINLTFFQCINRYERKDSAKGPIPFSGFLYSYFFYLLKKNVDTFLIDQLGRKTFPLLSDDATTDESDENYVVGFKADPVEYSLEQMLSTDKIDEFWVLGEKNVSPFDRLSVQERQLLKWRYVDGERSSEISLKINEHPNTIREHLTKIKNKVRDLIIELEIDEYAILLSAEKVK