Scaffold Ga0208362_1000200

Overview

Basic Information

• Taxon OID: 3300020558
• Scaffold ID: Ga0208362_1000200
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 13OCT2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20548
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (86.96%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001360	Metagenome / Metatranscriptome	714	Y
F098749	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208362_100020014	F001360	AGGAG	MSLAKFRKVHSKTGAGRFVVSEGVAPAAYLLPHPGLPTWYSDSEDDRFEIVIPKGTILSVVADSNGDARVVPANGTSSSKSWGDSMPTTWDPLDGATPNYSSGATDTVSVPARSIPIGCAQYDLYRPFDKGTSQGAGFITHGYVEYPMVSGLNNDVTVGSVVRSDVMGRPVLAAATDFYDSSAAYAYLQVGKVVEVEKFATNFDDGLLSYMQLPSDPGALKTVYELTRGGTFSGKLGIRANLDVNNVIGAFRVNLTL
Ga0208362_100020016	F098749	N/A	MKLIIGCPIYKRDWILNHWIKCVKSQSVSTEEIGFIFETSSSDDKTLSILDTWRKYDKSIAHFEIVIRDDTPHFEHQNNGRQWTISKYENMSKLRNHILDRVTEIEPEYYFSLDSDILIENPNTLELLIAHIKQGADAVSPLMFMTPMGKQFPSVMTWRDDVPGKAYRKEHYPLGTYFQSDIIMAAKMMSKNVYKNVRYNIHEQGEDVGWSLNCKQKNYNLFSASYLYAPHIMSPIMYSDFLKNGDNRLKEYELV