Scaffold Ga0208362_1000060

Overview

Basic Information

• Taxon OID: 3300020558
• Scaffold ID: Ga0208362_1000060
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 13OCT2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31937
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 45 (73.77%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004761	Metagenome / Metatranscriptome	424	Y
F040004	Metagenome / Metatranscriptome	162	N
F052563	Metagenome / Metatranscriptome	142	N
F054000	Metagenome	140	Y
F071195	Metagenome / Metatranscriptome	122	N
F072123	Metagenome / Metatranscriptome	121	N
F073489	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208362_100006014	F073489	AGGA	MSDNYAMQISVGFTDADVREAMPHLKGAAACVALESIELLLQSYVYEAGCEIISQLLREEGWDINGESFIEMGGW
Ga0208362_10000602	F052563	AGG	MDCKQIAYMPTIERKNMASNEPDDWIYDIIPAKQVEEIEDKAKNLQNNLDNGVNVVLSATNDSAIKLCQAYERGIQGNIEAWIHVMGFLETLIETIEQHLDEEGIDPYAK
Ga0208362_100006036	F071195	AGGTGG	MTTTNDAMYVALKAQYPTLSTLGDMMYAFAQDNGYNFRDTLGYEFYAATGAVGTTRGDLANSYWNDPDFFFNNLELENGNDLLLEDGSFVLMEAGNG
Ga0208362_100006047	F072123	AGGA	MLSITCDNCSTEFYAPELPRRGAICFKCHIGTVNLGFTYGKEDFHGPTIKERQQKQVADAKINGINAEPVGSRWI
Ga0208362_10000605	F040004	GAGG	MKESRWDIPKPNFKKDLEFGKQGEDQVKGFLQGIVNGSFEVKSDRYRNGRMVVEVAQNPRKHGWKDSGLAITEAEWWVYVYTMNEAMIVISTDRLRRYIKTLPKSRLRLFAEGTNNPARGYLLQPEEVMALLYDSAFDGNVEE
Ga0208362_100006056	F004761	GAGG	MTMSLADVRTMVRNISDLDSVDLPNTIIDNAVKEAFQRIIALERRWPKYQETYTFNTVASQRPYTISTIGDIREVISLVDTSSAGSRLTMIPYDNAEDIWLGNTDVPSRPYFYAIWDAQLHLYPKPDAIYAITLRAYRNPVYTWLTNTSEAIDLDEWFHVLLAYFVLARVYQRQEDPELSAMYLRSFEEGVAMARRDLMKTPSARPLLMSAGRQYPTMRRWLQTLGATLGT
Ga0208362_100006060	F054000	AGGA	MAYNPAEYEARRRGYTQQYGATGAMNAYANFLARQRGTRGRQDMLRQYEEAQPRVVAGYSRRGLVGPNVKSGIFSRGLQTLAKQRARNLGDYDQEQLGEQRMYDLGEAQRLEAFKNQLADMESEKAQTIANAARQLYANRMGMI