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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020558 Open in IMG/M |
| Scaffold ID | Ga0208362_1000019 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 13OCT2010 deep hole epilimnion (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 53877 |
| Total Scaffold Genes | 88 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (19.32%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F013763 | Metagenome / Metatranscriptome | 268 | Y |
| F018176 | Metagenome / Metatranscriptome | 236 | Y |
| F033039 | Metagenome / Metatranscriptome | 178 | Y |
| F042332 | Metagenome / Metatranscriptome | 158 | Y |
| F079652 | Metagenome / Metatranscriptome | 115 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208362_100001928 | F079652 | N/A | MKNRDIIMRRMERVEGGIEKLQFALRQNNWVVVDEIIQEMRDNINDAKAFVQQEPLGPGEINNY |
| Ga0208362_100001930 | F013763 | N/A | MSEFQLQPGQGYIYIGEYFHKFGKNVPTEKKIGKTTSLLDIPQIDDYAFSLDFHTPDIYLVEDVEKIYKALTTILEHDQLKEDWFEDTDGDLKDRVTKFMTAFGYKEIADVDGDGIPDHLDNVIG |
| Ga0208362_100001934 | F018176 | N/A | MLNLLTPILLLLSPIDTTKVNVNVTNVQHIQTIGGRDVTFGVKETIEELLIEKGYIPDDSLGMSVQVSIDSIYSPQQIVNIMGLQWLKKDYIVETTICIGTGCHKSVGVRKTFIFAAFLNVENNEVPLNRKAFSKALQESLTKTTKQL |
| Ga0208362_100001968 | F033039 | N/A | MSPHQKAALEIVHDYYFMLPNNGYMYGGCNSCDSRYKEGIECALLSVKRIILTLEFMAVESDAAFIMDRINFYDEVQAELYKIKEGNGGVSLNDLMEVFKK |
| Ga0208362_100001969 | F042332 | N/A | MKFKAENNEFHHGFQMTFDNGCTISVQFSKYNYSDQGETTAEVAAWNSNDDWMIWDGDNWVILTNGDTDVMPRQTTDDVAMLISELVKLK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |