Scaffold Ga0208231_1000634

Overview

Basic Information

• Taxon OID: 3300020557
• Scaffold ID: Ga0208231_1000634
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 15JUN2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9528
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (77.78%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001176	Metagenome / Metatranscriptome	756	Y
F007921	Metagenome / Metatranscriptome	342	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208231_100063421	F001176	GAG	VSDNGTGMATPPNNQPSGAVTSQEAGRKNPSQGKFRSGVNGPRPATKIDRNKHGIRRETTIGPKKTRPKKV
Ga0208231_100063426	F007921	GGAGG	MIDWLVNRIFRWDPLRKAIFDEVRLYQSIDRSIWEAEKESPTNLTWSEGDTWYGWTYNRELKRYYFDDIGNESLMGLWEDQWLRETDEQRPL