Scaffold Ga0208486_1003006

Overview

Basic Information

• Taxon OID: 3300020556
• Scaffold ID: Ga0208486_1003006
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 03AUG2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2902
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009331	Metagenome / Metatranscriptome	319	Y
F016642	Metagenome	245	N
F028460	Metagenome / Metatranscriptome	191	Y
F057100	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208486_10030061	F057100	GGA	MYDDDKKRVGHDGTDFAAYGLPDPRDQYGNRDYTPSAYADKVDAAFIADVWRIMDQAGNLLVRKHHDYGPKNIAHSPGGPLNGLRVRMWDKIARINNL
Ga0208486_10030063	F009331	AGGAG	MICNNCMDAGVENSLAHYKRAAKYHDKCNDKGCVCQHKTGPGYVKRDGSKVPLMQTQSP
Ga0208486_10030064	F016642	GAGG	MIVRLSRDEVRVCTLLATERWLAKYGSVDRPNYAEGKKNGYLEHELLANVRANVSEWAVASLTDTAWNVPWYPNELHPRRAKLPDVGNNFEVRTVRTRDSIPFWNKDNGKIIVGTKILDEDYYSQVEVYGWCNPEEYAKSQYRDEAIGGWRVPVTDLKEF
Ga0208486_10030069	F028460	N/A	KTEACVMVLHHVSEQSEYGSPSNPPHRRAIHGKVSQLPALILTLGYDPTQGILKVAPVKNRFGAHTADGSKYAQLLVNYAAVQISDQNEFGWMLRKDTIAGYQGGYNV