Scaffold Ga0208486_1000060

Overview

Basic Information

• Taxon OID: 3300020556
• Scaffold ID: Ga0208486_1000060
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 03AUG2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34185
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 49 (84.48%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021112	Metagenome	220	Y
F028173	Metagenome / Metatranscriptome	192	Y
F045100	Metagenome / Metatranscriptome	153	Y
F077306	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208486_100006030	F077306	AGGA	MPAFDGVTSPSIAVQFLKSGTWTSVTISDVVQIDFRRGRERADLRDEAGFASIVFNNTSGIYDPDNTSVSSPWVVGGTSILRDGLQMRIVATWNSTAYPLFYGFLENNFTNQGFLPNVTMTFYDGIGYIADGFAPALAVAANSETAAVRAGRMLDIAGWTTANGFSRSLTGSVVMLATVQNRGCMQAITECVNAIAGRFYISKSGVATLVPLADKFSRPTQLLFSDSNTSNTVTYSDLITNPGTKYVVNQAIIMRGDNNQVTSTYNPSVAAYGVVKKEIFAPVNTDTSATNLALYESRKLATPDTYVERIEFNGLVVAKNGLLYPDFLSTELADQVSVQRTTYDGRPLQFNLVVEGMKHTITQNNWIVSFNTSDINPYSITI
Ga0208486_100006032	F028173	GAG	MADEVIVLYGVKETLTALKEFDKDAVRRFNKVINNELAGAEKDAKGLIDEDPPMSGWRKVDATKGRTRGGAGWPGWNAGEVKSKITKTKAEGKVRKDYTTSAGALLNKSAAGSIFEVAGRKTKSTTGRGSSAQFLRTLGNRFGAASRVVWRVVDKDKAKIEKNVEQALNDAKAQLQRYLNKERG
Ga0208486_100006037	F045100	AGGAG	MSYTITSDNFEGKTKGDSITEKELLESGLNIEALITGEHLKKTATTKPATVEETK
Ga0208486_100006051	F021112	GGA	VETEQLTCNICLRPSRNEGACFTCRFNLQSQLIELPELQIKASEYLTPGRSGSGSPSTERSIGINVNALDFSMATELIAILHGWEQIIRAERRLTPPALMVKESTTAKEVEATCQFHIAHLDWIVNQDWAKDFADEVKELHSKGMAAAQQFKEQPRRIPCPTDDCRKFVVIDVENLEKGVTCHGCKNSWSVIRLIALAMSNPNRRFYLDIEAIALWLGITQRAVYKIVKGNQIPQKGKLFDLAAIIKMRDKTN