Scaffold Ga0208358_1003883

Overview

Basic Information

• Taxon OID: 3300020555
• Scaffold ID: Ga0208358_1003883
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 10AUG2009 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3452
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002343	Metagenome / Metatranscriptome	568	Y
F003540	Metagenome	480	Y
F003785	Metagenome / Metatranscriptome	468	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208358_10038834	F003540	GGAGG	VNMQKIVDMLFPVLLAAVGWLLTEIASFNNRLMSVESKMPALITPEGVPTDSPLSAARRQELKDDIMEDIHDLQVRVKLMEERSK
Ga0208358_10038835	F003785	GGA	MTSVQELEVTVTSHIDVCAVRYEAIHARLKRLEQLVLKVGGVIIVILLGALGSMGMLLLEALQR
Ga0208358_10038836	F002343	N/A	VNDIDLKVTLEEAIAIVNLLGSLPTSQGGYPLWAKLKAQVEPLIPKPDEVKQ