Scaffold Ga0208599_1006427

Overview

Basic Information

• Taxon OID: 3300020554
• Scaffold ID: Ga0208599_1006427
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 17AUG2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2066
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010302	Metagenome / Metatranscriptome	305	N
F024955	Metagenome	203	Y
F030063	Metagenome	186	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208599_10064271	F010302	GGAG	VVDVLLNTEDVVVLGPPDSVDVLIDIGPQGTRGNKFIVGSGEPNPLTSSGVLLGTTLILNDMYINTAPGENYGYMYQYISQAGANTWVQVLKVSPAIYSAVETISFTSGAASITIPISNIVTVSGSPLTASNFNIQFRIEGANPIASAMEIPALAGAGTNLVINFDAVQYSGGTWSALTGSKTVHLFISIV
Ga0208599_10064272	F024955	GAGG	MAVENIGNLVPTKIPALADDADIQDALRAYHYGSYDFDTAETDTANLLNPSIAYTINDLQEQIDDQVALELAARDSSRVTTTAPTAAAFTAFSNTIPDGYIWVDKDAAAPVGYISATSVYTATQPTTGLANGVIWIKKGSNPLEMYVYNGDTNAFDQVV
Ga0208599_10064273	F030063	AGGTGG	MPTSFNYDGKPGYIYNVADDTWYELSGKTDTSGTFEWAGLQSYLSAVTMLEALVAKKGINNYLNPAARDASITSPTAGTICVIRQDGSGNVINQLQFYNGSSWIAFIPAQTGKAGQVLQTDGIITSWQDSTGLPDVFLLMGG