Scaffold Ga0208599_1002347

Overview

Basic Information

• Taxon OID: 3300020554
• Scaffold ID: Ga0208599_1002347
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 17AUG2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3542
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001338	Metagenome / Metatranscriptome	719	Y
F058813	Metagenome	134	N
F065732	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208599_10023472	F065732	GGA	MEEPLSMEETIAWAKGIGISAERVAFLLACPKYTRTGRKDQPAYIKTDNPNHHLQKQGDCWWLRIRRRKTDIVHNLGKDLETARRHRDEMLAAYDKGEPIPHLTK
Ga0208599_10023473	F058813	N/A	MSPPTLVLICGFARAGKDSLAEGILEWSRRPSRKTSFAAHLKDAANDFLWSLNLEGDFHNEAFKVKHRDVLVTLGKFARSLNPDVFAENLAHFVPIQMGPDEVAPETVVVSDWRYINELRVSQSILWNLGWKVRTVYVSTAGIGPANDEELDSICEIKQFHSFDQEFVFAPNSRQCILAEGRHLAKTWNL
Ga0208599_10023476	F001338	N/A	MTTENNDRPPLTSISQNGTYKLKLIRPKGTDKVKVWEDGTASARLFFVDDKGFCLSKNFSTKYGKALAMLVGKFSGKFTNEIRLDATPAEYLEYIAPACGQTILVGVEVEANGEWQGKPQYKYKMTYPRGSQSPVVSEPIPDNPPF