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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020554 Open in IMG/M |
| Scaffold ID | Ga0208599_1000730 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 17AUG2012 deep hole epilimnion (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6949 |
| Total Scaffold Genes | 14 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004816 | Metagenome / Metatranscriptome | 422 | Y |
| F009252 | Metagenome | 320 | Y |
| F023523 | Metagenome / Metatranscriptome | 209 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208599_10007303 | F023523 | N/A | MISEQSLEGWDNNPVKFSNVKYPQTKDSNAPQNFFLAIFCGSRGSGKTYLLTKLLKLLEEKKMYFEGNEIPQRIVLICSTAHSDSNRVFKSLKNLNWDDDVIDEYNDSLLEDKMHELKYDLEHAKEYKLYKTVFKKFKECKDIDELKDDEMELLYKHDFKDFKDLDKPKYPDGFVTHYIIDDMLGTNIFKNGRSLFTNLCIRNRHVTPSNIIISTQSMMMIPKTIRLNANLIALFKFANKNTILDDIYPTMSAFITEEQFKNLYDYAVSENHNALVIDATKGKPIFKKNFESVLNIN |
| Ga0208599_10007305 | F004816 | N/A | MKFIKYKQVARITLYGFDDLYAGNASSVHTEPLNSEYFRNNLNAGVQVGNNSKRMRFQIKGLDNVKLSEYARFCIESINIPVLYDQADNVKSVAHTIVRMSNLSSLNCFDSHGNGQTDPVIFTTTTHTTQQRVGTLLAVNAHQNRSPAPVFYNPQPEILYNFPISSNFLNNRYFDFTLIMQFIPGVQNYSINLIDDQKYFDMFHISFIVYDLDEEELLLTSTQDVDFKKVGETLPRKINNIR |
| Ga0208599_10007306 | F009252 | N/A | MDKINIYINSKNRKENENANKFTVKIPNNLLRLNRDEYFTLNVNGFYCYNSWFNCIDGFNNMFQIVIYDVNDIITSIFEYRLQDGNPNVNDVRTNLNNLLLNKVVVSYDKIKNKFIYKRTLPITTNNFKMYIKIINSEDFLGFYKSDREQLILLPYLNNIYCNSIVNISGDEAIIIKISGDCILAGNTVDNFGNIDYQPSNIIFMKPIDVASNGLLKYNNEDGGDSFQYRLANIEQITSFELTVHNQDDEFIPSFSDYILLLQFIRHSTQEDKTHTILESILDYIKQMYLIISQIVFPPS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |