Scaffold Ga0208599_1000487

Overview

Basic Information

• Taxon OID: 3300020554
• Scaffold ID: Ga0208599_1000487
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 17AUG2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9204
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (4.35%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008751	Metagenome / Metatranscriptome	328	Y
F031094	Metagenome	183	Y
F035305	Metagenome	172	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208599_100048714	F031094	N/A	LLKQNQISMKTLLSLNNNFYPYNGQFIPQIGDYIFLDYELEGTKFFLVTIRTIDLSNNQIILSIVKS
Ga0208599_100048720	F035305	N/A	MNLAIWEIAPSKTEIDLMAQNVANELSEGIIKAEDIAVKVAVVEAFAKALRSKSEEHIIDFLDKCPKGKYDYLGASLSLKDSQTYDYGAYSEKWAELQVKIDELKAEQKDIEENGKKFERGQIPLKSYKQTYSITLNK
Ga0208599_10004874	F008751	AGGA	MQSIVIFIAGQAIFILIGLVSIYVKVSLKLKELEVRVSMVEKQDDIIAKKLDQIQATLNALSIDLQNKQDR