Scaffold Ga0208855_1013676

Overview

Basic Information

• Taxon OID: 3300020553
• Scaffold ID: Ga0208855_1013676
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 17MAY2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1281
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002721	Metagenome / Metatranscriptome	534	Y
F074773	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208855_10136762	F002721	GAG	MAKDDRLDLGRYIQNPFNRRGEIAKRLKFDDLFRSEAETGQYPWNPSRFGQQDLMRRAMTRKINLNPDLEFVGNTPFFDDNSEVTEAYDMFGLGRFNRPEDYDFDEGRAKTTQRPQDQPDFNPQWIEAYKLSPTLNPGKVAKNPMPRMRNPDPNGYLMAMAEKRAENEVEDKPSIAQLLDRKGVMKSMPVKEEEKEGEDTANKESVETNTSPGKTLNT
Ga0208855_10136763	F074773	N/A	KKGITSAQLQENVLSNPDKYDEKTVKQARLRQTLVGLKKKKDQKKSEG