Scaffold Ga0208855_1013659

Overview

Basic Information

• Taxon OID: 3300020553
• Scaffold ID: Ga0208855_1013659
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 17MAY2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1282
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000710	Metagenome / Metatranscriptome	925	Y
F006697	Metagenome / Metatranscriptome	366	Y
F031077	Metagenome / Metatranscriptome	183	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208855_10136591	F031077	N/A	SNVGANGNQFQVNEALLVEKIGFFIPTAADGIAYNGLGAGISVKFDLVIGNKTVIKDATVELGGEQAFYNDGTVASAVIDLEGVGILIPPQVEYYVVAKPFTNDTRTASTQRLGCYLFGTGALLNFNTTI
Ga0208855_10136592	F006697	N/A	MANQVQKVAYVDSKLGVSLPGQQTTRVIYDSVNAAAGQQFFQFFTNFAGKNEFQTNLTTNKLDSAESMVIKSVQIIMGSAVSNLTDHLNLNITVGNQVVLKDFDPSFNCSSRGLSFDRLHSGFNSTTNLEVRLLTEIVIPPQVNFKAELQISNALIAVNDDVTIILKGYGRIFSAGNSF
Ga0208855_10136593	F000710	N/A	MATNMNISYRQGIRNKGFQVTVPTTGATQTLSLSGLAKAFEGIILSSTTSAAPATIVNATQLRVTLTINNDVVIDDVVAHELGASVATGVTTGFPAFIPFPRALTGQDTILLR