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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020553 Open in IMG/M |
| Scaffold ID | Ga0208855_1007253 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 17MAY2012 deep hole epilimnion (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1934 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007918 | Metagenome / Metatranscriptome | 342 | Y |
| F008991 | Metagenome / Metatranscriptome | 324 | N |
| F010534 | Metagenome / Metatranscriptome | 302 | N |
| F014823 | Metagenome / Metatranscriptome | 259 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208855_10072532 | F008991 | N/A | MNLTVMITEQVEKKLEAVLKGKYDNRTIWMYYKASLQMLRDILENLIVCHHTTHSLAEKDLYYEQNKVQIVDWIQWIQNRTSSDKLVDLDRLLSKLIKDKAENLVEALTEENPSDRMTTLSMLQMSIQIALFMETQQLLKSPIVIQFCEENGWAV |
| Ga0208855_10072533 | F010534 | AGAAGG | MSDKVGEKQEAIMNLIDQQIKEALKDQASRLEILQDRIKDAIDISTTDHSQGIKQVMLFVTKAHVQAWITSLKHKVDTAGDCEICDLEKILGEESLEIAEAIKVALSNRNEETRNRILGELLEKTITKIEALSVRVSPAPQL |
| Ga0208855_10072534 | F007918 | N/A | MCDTTLEESDPFRKQEIEEIKQELLSILANVETVTEAMNKAILKEEDRREQFRILCSSIDYLFGENIKVIEKRKDDLEEIDPSLHSIACKLSTRMERLRNVATKPDLESMKTEMEKVLSQQRIEKFQTNPQQEERRPQKG |
| Ga0208855_10072535 | F014823 | N/A | GTPILIDYSLYREMQEDVREGSQAADELTSVVAQIIYKEIKRRKEFRSLLMSVEQTLSTSMRRVHRKVIELRKENSKISKEVLELEFDLERIREVVMSPNLEQMRTLIEDIYDWKVYRQARSEKEIEDLQSTAVAEKKVDLPESLEIL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |