Scaffold Ga0208855_1005476

Overview

Basic Information

• Taxon OID: 3300020553
• Scaffold ID: Ga0208855_1005476
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 17MAY2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2346
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019600	Metagenome / Metatranscriptome	228	N
F031767	Metagenome / Metatranscriptome	181	N
F033705	Metagenome / Metatranscriptome	176	N
F100445	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208855_10054761	F031767	GGA	MNNNPTNQQKIIVKRLERKPRQNYVKTLASLKSIVEETDKLYNQFDSQEQALRKRVSGCQEWTRYWTRGGNLSKKEKSLMYYLEDISNRLIRISDMKNLEEKERLLYYLKVEISLETLHNEKYQK
Ga0208855_10054762	F019600	N/A	MYTPDRNTSKLEVGYNLEKSLKEARETVYEGRKAVEDLTSSITQLVYEEDRRRKEFTEILAAIQAVLDTVQNKSIAAYQRYNGDAILTSNLKALNSEILKTTSLVSSSDIGEMKEIIEKLANWELNEQ
Ga0208855_10054763	F033705	N/A	MEDPVVAIHPLDYLFQGLEAAEVLKLHLVSLIKEEANRLRNLKLKLNSIRKLVEVNQTNSRKLVQIFQEDQNIMPLVAKFITILTELDEISACNTISEMIGVLNKISECILQIEIHLN
Ga0208855_10054764	F100445	N/A	MTPIVNEAQAKLIPLAFDLNNRIWMEGYVLCCSFLENAAQILQIQIMDGQGFETMIEYDVELNTHINQVLNILNKEQSITPDMTVWVMSLLNHMLYLKNIVFNPDPSDLIKFIKPLQIIKLNIKESRVLMEGALTWVDKKMMMQ