Scaffold Ga0207940_1008904

Overview

Basic Information

• Taxon OID: 3300020552
• Scaffold ID: Ga0207940_1008904
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 06JUL2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1887
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011997	Metagenome / Metatranscriptome	284	Y
F022823	Metagenome / Metatranscriptome	212	Y
F038566	Metagenome / Metatranscriptome	165	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207940_10089041	F011997	N/A	GTYKLPIEERVNEIMEATKKEYPNVDNYLLWLCAVDYVLEEKGLKKDNEDGVKMYEEYLEQRKIFIYNSVKVEEDDVIKYDYNVLQEV
Ga0207940_10089042	F038566	N/A	MSKINIYVNSKNRKSDESPSNFSVIIPDDLLKIKKDEYFTLSVNSFYCYNDFYHCNENCNGFNIIVRTNSNVVLGQQMFYLPIGNPNIIDIVNYINLILQTNDVLSCSYDNIKNKITYTRLMPQESVNFTLYINTMNAGSFLGFKNNIEVIISFSGTESTNPINTNTIRALSIGIDGDISFSHNNMESNLNNSVYKASDLIFQTAVNVPKGYLINYQNVDGGDSFKYTLGNHDRIKYFILSVYDQDGNTIKDMTDYIIHIQFTINKISQQEQLLKH
Ga0207940_10089045	F022823	N/A	MEDVIHDIQVIEEDVKDVEQKCKKVNCYALYDAIVATIKLIYDILFCCCKK