NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208360_1037679

Scaffold Ga0208360_1037679


Overview

Basic Information
Taxon OID3300020551 Open in IMG/M
Scaffold IDGa0208360_1037679 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 27JUL2010 deep hole epilimnion ns (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)619
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004234Metagenome / Metatranscriptome447Y
F015420Metagenome / Metatranscriptome255Y
F071222Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0208360_10376791F071222N/AMDKEQIMKIILAEEASLYDQAVELRDAFGDEDPATKRAYSQWVVIINLIDKINEETN
Ga0208360_10376792F015420N/AMKRLINYFTPVGAEEKAFAIAMLIVTTVILSILFLFTFLELIL
Ga0208360_10376793F004234N/AMNFIDLYKKDNTYWSNWTTDYDSDVYIAGTIEPFTYNATETDDGDMSLFILSDANLNLLKSKL

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