Scaffold Ga0208360_1004217

Overview

Basic Information

• Taxon OID: 3300020551
• Scaffold ID: Ga0208360_1004217
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 27JUL2010 deep hole epilimnion ns (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2299
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014974	Metagenome / Metatranscriptome	258	N
F058995	Metagenome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208360_10042171	F058995	N/A	ISYCKRLKALPKGLKVARIDAYNSGLIEIPDDLQCIYLNLQHTRVLKQLPLFKHFMNIDLEGCRFFKTLPVGFTAGKILIQESKSFVSVPNNVNIKELTVNECEKFTSIGSNCTIERLFIGYSCPNFITLPTDIKADLLNLTYINTPLRIQLFNKYKTKPKVLKALKIMYPNVKEFQIG
Ga0208360_10042173	F014974	GGA	MIKLKDLLLENDDIFIPRRIEDRQTKYNNITQKEVNTIIDDFIDKRYNISLMLSPKDIDDEGYEYGTLQHNGEFVVPDKLKHTPSSLTLDYSNVTKLPDNLTIGNDIYSSLNVVGCYKLHQLPKGLKVKTIHARSSGVRVIPDDIECEYLNLDSAAYITELPLFKHYIETINLTSAVKFKTLPAKFTCGTLNIIDTPVERIPDNVKIKYLKASNCKHLKSIGNNCEIDNLILINSMIESIPTDIKCSNYMNIRNTPFVNKLLKEHGTSEKVMEELKRSYPYVNDFGI