Scaffold Ga0208360_1003701

Overview

Basic Information

• Taxon OID: 3300020551
• Scaffold ID: Ga0208360_1003701
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 27JUL2010 deep hole epilimnion ns (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2494
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000645	Metagenome / Metatranscriptome	962	Y
F005878	Metagenome / Metatranscriptome	387	Y
F009683	Metagenome / Metatranscriptome	314	Y
F085644	Metagenome / Metatranscriptome	111	Y
F099166	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208360_10037011	F099166	GGA	MTIKDLSLKLAAISLLADQAKRLKDELRAELQGEMNNLGADRVKAELGDEVIAYITTTKPKFKWVIKSERKFIEWVKTNVPSEIVETIRESSIDKILEKFNYLDDVVIDPNGEIVDWLEGSESEPYLTTKFHGEGRAKLRDAIIGLNGANEIDVRKVLELEG
Ga0208360_10037012	F085644	AGGAG	MGREDKLGRSTHSLAYIRQMLEWGFDKEFIARDMGVNLASLEIRLNRAKKREQDDNQRPESETGGN
Ga0208360_10037013	F005878	N/A	MIDEIHPFMCGQCKKVTAQRGIIKYDSEITEGQDVWLMECQNCFEQRLVEPMDRVANKEDAITRCDQCGNYKMKAAKCRICKIADGQERIKERYWNGNATLERFIDADI
Ga0208360_10037014	F000645	GAG	MSNYLDDYVSVQDRLKEFINAYPDYRIKSHVLEESLIPTCDVYIVKVELYRTEADSVAWTTGLSSESKSKQYALELAETGALGRALNLAGYFAKPSGGPKKPIQTTNKALADFVADQRPNDPEPIVWDVSHIADQFGAEVIDEVPLCGNGCGPMILKQGTKEGKEYRGWVCPVPKSGHPAKWMKIGGDGHWVFQK
Ga0208360_10037015	F009683	N/A	SERSLSDWLSDAGNTLDDRGLEYGDPRHNLLRIYKIARVLGVQLRDPSELATIFIATKLSRMVESPEREDSYLDLIGYASILAFTRFSSPEDWDDVESDSQH