Scaffold Ga0208360_1001644

Overview

Basic Information

• Taxon OID: 3300020551
• Scaffold ID: Ga0208360_1001644
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 27JUL2010 deep hole epilimnion ns (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4239
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003786	Metagenome / Metatranscriptome	468	N
F008078	Metagenome / Metatranscriptome	339	Y
F049620	Metagenome / Metatranscriptome	146	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208360_10016441	F008078	N/A	MKQTPQKKAKFLFVHYHNLIQSIGGELDNEILICILAKQCALFEVRQILKEKWNIDVPGSQDEYYYWEEVEHEIESYEK
Ga0208360_10016444	F003786	N/A	MNLTKYQPHNQDEQAIIDARPNRIANIDIKDSYRQVLNTLSALFPIYGIDGDIAFYSTVTKEIIKTFGQIAANEIEIAFRLFAAQSLDLDEDVKFYGKANMHTIGKILNAYIIYRRKIIAAHDNEVAAFRHNANMEERARKTREELYANFPTMLKEFKGKDYTAVPLYWYDMCLQFDMVTYEEGEKRALWEEAKELALKEPPENMDLMSIRSHAKKIEQGNLKRAAVIAQQLAVWRKVLK
Ga0208360_10016445	F049620	N/A	MTTEERDDKIVGILTKICINVLVKNLFDKNGDTVIQDILTELNTVPVAEEKEYTRCNSSHRFLHKTAMEYLQKTLAFKEENNI