Scaffold Ga0208360_1000860

Overview

Basic Information

• Taxon OID: 3300020551
• Scaffold ID: Ga0208360_1000860
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 27JUL2010 deep hole epilimnion ns (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6461
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (17.65%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin139 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028461	Metagenome	191	N
F054033	Metagenome / Metatranscriptome	140	Y
F088542	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208360_100086010	F028461	N/A	MKKQNAATMFKNPQLQESIIRQYKEAGLDFTVKHSNYNTQIIGQESVLKFVQTEHSIRVFIAYNKIVKDLKASDRTVEILQGDWSTENFDSKNGLKPCKLNSVLNLDITSAYPYCLFINKLITLDTFNYLMQLPKNERLPAIGMIAKKSVWIEYKKGDASSWELKEGEYANIFFFVINQITDLMAWAAEIAGSDFLFYWVDGIFLRPGIKKAKLNEITRIFAEQGYYYKYENVKHFSVVRDGDKLFINMIKNGEEKPYTMYDKNLARNFTKILQQLENEQNTLHVSGATA
Ga0208360_100086014	F054033	N/A	MITIIVHDKQWFIDRIGKRIYRRNNICNCAICLNVHEVGLIITDKDHAIYLYDCQEMDLIYYEK
Ga0208360_10008609	F088542	N/A	MAKKKSTVQYKDRKYNYPKGFTKYGKAKTGFMPAAQGARVFVENNLEKIQKGTIPYDSLTQREKRVYRGKTSNTFANTFTFKDKTYYDPTGVLRKALDNLPALKGKRNLTNLLPEKDFKDFFDQRINPTKGKLNEKDRSKWLEFSSSLYDFNKGEKAKFYRDESGSLMDIVTKLNKARKQGREIRVIDTDGSIKVGVNAIDRMREFEAEKLKEFTDKAKPGQNIQLQIIYISTDWNPYTNTVTFNLNNVQVNDLNKTP