Scaffold Ga0208360

Basic Information
Taxon OID	3300020551 Open in IMG/M
Scaffold ID	Ga0208360_1000512 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 27JUL2010 deep hole epilimnion ns (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020551 Open in IMG/M

Scaffold ID

Ga0208360_1000512 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - 27JUL2010 deep hole epilimnion ns (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9081
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (25.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

9081

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (25.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F055287	Metagenome / Metatranscriptome	139	N
F066267	Metagenome / Metatranscriptome	127	N
F080647	Metagenome / Metatranscriptome	115	N
F080651	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208360_100051211	F055287	AGG	MNWLGFISRHYGLIAIAAAFILGKQSCNHKAEAERHKSNYEAIQQTTGSTARRLDLTVEQLAAENKRLLDSLKIKSGKVQFVYRNKWITKTDTFEVEVERWHIDLIPCPIQSFTVDTNCIKLTALLHPDSAAKVTLTTDYDLSVVGYWQRPGKWFGAKLWNGLLGKKEAYIKIASPCFKDSAVYLNKFSQAQ
Ga0208360_100051214	F080647	N/A	MIETLLFTSLFIFGVWLSTAEGMIGDELRWLFISRFPNFAKPVTDCPTCMASVYGSLAYWGQHMVSGNTTDLLTFIGWPIFVVCLAGLNGIILKLAKWS
Ga0208360_100051215	F066267	N/A	MVISKIANWLVKNYPDAVLVALKPDSKNWKAGCEFMVDIDGHKYYKFRDSGDVPLVRYKDIQAVLIQLDNRLTSDELISILQIARESVVAAIEGQSRKDRGKGLQQCLWAIQEAESRHKELGLHTDLIVELAALNLIRDDENPFEINETIQAEKLRLFKREFVNHDFFLSAGMNEFLPNAAQLADVWQGLWQASDRYQSKKKDILKSILGEIRSTIG
Ga0208360_10005124	F080651	AGG	MTTKEYIAKLNKAERAINGKRFVGLSTSVGKTQFKRIFQDGLDANGAPIKPEYSTKPIYIGPMQTPTADDAGYYKGGYKAFKSKLGRGKMVLFRLFNQMYLESIVNPELKISNTGFVIATGMTYNAGNPKGKVDGLLDKYGDAFKFSDAERKEFTDKAQQIVVDLFK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208360_1000512

Overview

Ecosystem & Geography

Associated Families

Sequences