NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208360_1000143

Scaffold Ga0208360_1000143


Overview

Basic Information
Taxon OID3300020551 Open in IMG/M
Scaffold IDGa0208360_1000143 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 27JUL2010 deep hole epilimnion ns (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21205
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)34 (87.18%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008237Metagenome336Y
F012770Metagenome / Metatranscriptome277Y
F014237Metagenome264Y
F046323Metagenome151Y
F079979Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0208360_100014314F046323GAGGMSKQFRVTYETKGVKVVNVWLPEGTELPSNWGSMTLREQDEWLYDNQSEAHLNWSDETEGEVVNILPVAELKVVI
Ga0208360_100014319F008237GGAGVTLEWARIEPWQYVVDAVASEYHRKFSDIELEDIRQSLYQWFLEHPNKLDTWEAIGVKDAKNLIYRSLRNQALDYCQHWKAKSGGYETSDLFYYEADMVEALLTPVLRGEWGQINKMDLGRPGKPSAPNEGGNMMAMMIEIDFAYWKLTKDDRKVLFLRHAEAMDFPDIAKELELGSEDAARMRHKRGIRKLINKIGGFKPYRDEDLEQVVNQEHSPVE
Ga0208360_100014322F012770N/AVSDETEPPHNYCHECRITFEDSFELVDHYLEDDEEFDPYYILPNGFKLMLGSLLRFMFDHADEPDQIRLITQSTYVTLFASENGYDLVDELVEDMVVKSALQDFDQSLIKLLEEETNDDEGGA
Ga0208360_100014325F079979GAGMMIREEEDDTTQEMRAFVLLELKRETAALIEKIEAAKVPVTDEWTDGLNAGLAWAVRILNKDKSAS
Ga0208360_100014334F014237AGGAMDTFKNVLMRIGAVIAAEALGVIGAGSLVGIEVWQAAVLAGALGAARVLEALARFFLNDGSLSADEINAAFAKVDKKASE
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