Scaffold Ga0208360_1000064

Overview

Basic Information

• Taxon OID: 3300020551
• Scaffold ID: Ga0208360_1000064
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 27JUL2010 deep hole epilimnion ns (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36352
• Total Scaffold Genes: 60
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 51 (85.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012767	Metagenome	277	Y
F021516	Metagenome	218	Y
F066715	Metagenome	126	Y
F098633	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208360_100006412	F066715	AGGAG	MADATISRRYRDFDIVLHTATSLATTLDVRDVAGAIVSFGTMNTNTSTLQMFVSPTRAGSFSRLYKADGSIAALTLAPSSTEARSFSLPDEVFAAEFLKIVSVTTNSTGTVGVVMFKS
Ga0208360_100006419	F021516	GGAG	MRKITFTRAWRAYRKGQSVEMTGGLATQLVAQGVAIEDRQQDLIETAAIETAAETADATPKKRGRRAVPKPDSPDTASR
Ga0208360_10000643	F098633	GGA	MTLADLQSQCWAALPPLRKRLVGRDTVNDLVQLSVANWSGDYLAACQDNQQRDVYVHALLTAVKREHQAAGDKDPGEYGFIWVLLLQAVAVAVVQWLVAWWLERLSHRALLTVMQYELTK
Ga0208360_100006457	F012767	GGAG	MPISALCERWTISKDQVLRLRDVWRLPLRNDRRLRFKPERQRDPTPREIAQACREIQARWDERTREERSVVKRSTVSMQRIEMTPEARSAFEQMGDE