NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208600_1042868

Scaffold Ga0208600_1042868


Overview

Basic Information
Taxon OID3300020550 Open in IMG/M
Scaffold IDGa0208600_1042868 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 08OCT2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)688
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005737Metagenome391Y
F042803Metagenome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0208600_10428682F005737AGGAMFEIEKYTTPINWAQVCLWIVSIAAIVVVALDLFVWRASC
Ga0208600_10428683F042803GGAGGMLTDGDEGEFTTFLIWDEVTVKWAWFDGEDHEMDGYFDIFVYKDGLEITYDIPKLNFKWIEEEVKKQAGYEPPSRHHVASVINGYFNKTF

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