Scaffold Ga0208600_1000237

Overview

Basic Information

• Taxon OID: 3300020550
• Scaffold ID: Ga0208600_1000237
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 08OCT2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7823
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028148	Metagenome	192	Y
F079951	Metagenome	115	N
F086618	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208600_10002371	F079951	N/A	MACPNVFNAFAVATESLAQDVYKRASYRSMWLNMIERGEYPQGTGLTQTSFTTTSI
Ga0208600_10002376	F086618	N/A	MTSIQRIETAVDNLINGNLTHARKSARGLTYSDIFDWLTGPVGWTEKRSRACADYLIGRIDYRTYCKADR
Ga0208600_10002377	F028148	N/A	MKTIHEIIQEIQFFDPAIRAFDAHDLPQSVRAYLHHNYRMDARLTDEEQQLVETSFEPFADNIREAFQDDPRPDATRFYLFDDLSLYVKTNAGPELWADAQVFVVERILPSMRLTRLEADLMREIGMDDQVSEVRDDFFSAFAHVLHRDCGIPHCDAREHWNAFSRQLSDYACESIVLGGGESGRAEGLRFASEYSVNA