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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020550 Open in IMG/M |
| Scaffold ID | Ga0208600_1000104 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 08OCT2012 deep hole epilimnion (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 10883 |
| Total Scaffold Genes | 27 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (7.41%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F019993 | Metagenome / Metatranscriptome | 226 | Y |
| F028461 | Metagenome | 191 | N |
| F088542 | Metagenome | 109 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208600_10001041 | F088542 | N/A | YPKGFTKYGKAKTGFMPAAQGARVFVENNLEKIQKGTIPYDSLTQREKRVYRGKTSNTFANTFTFKDKTYYDPTGVLRKALDNLPNLKGKRNLTNLLPEKDFKDFFDQRINPTKGKLNEKDRSKWLEFSSSLYDFNKGEKTQFYRDESGSLMDIVTKLNKARKQGREIRVIDTDGSIKIGVNAIDRMREFEAEKLKEFTDKAKPGQNIQLQIIYISTDWNPYTNTVTFNLNNVQVNDLNKTP |
| Ga0208600_100010415 | F019993 | N/A | LLLINFVEMNKEVKLLLVAGVGYLGFKAYQIYTAIKQLSYAPTGIRFSINKDRGAIGGTLFVDIINPTAASIKIDGFTGTVTTTDGTMIGDYKGAPLTLRPGVNNVRISWGSRSSVTLVNLAFGIAQGKFPVLSFNTVYNIKGLPIPTKFKMNTAAYKPTFI |
| Ga0208600_10001042 | F028461 | N/A | MKKQNAATMFKNPQLQESIIRQYKEAGLDFTVKHSNYNTQIIGQESVLKFVQTEHSIRVFIAYNKIVKDLKASDRTVEILQGDWSTENFDSKNGLKPCKLNSVLNLDITSAYPYCLFINKLITLDTFNYLMQLPKNERLPAIGMIAKKSVWIEYKKGDASRWELKEGEYANIFFFVINQITDLMAWAAEIAGSDFLFYWVDGIFLRPGIKKAKLNEITRIFAEQGYYYKYENVKNFSVVRDGDKLFINMIKNGEEKPYTMYDKNLARNFTKILQQLENEQNPLHLSRATA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |