Scaffold Ga0208600_1000014

Overview

Basic Information

• Taxon OID: 3300020550
• Scaffold ID: Ga0208600_1000014
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 08OCT2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25366
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (26.53%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039944	Metagenome	162	Y
F056323	Metagenome	137	Y
F061670	Metagenome	131	Y
F072111	Metagenome	121	N
F083667	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208600_100001413	F039944	N/A	MKLSNLFLCLALLALLALAIAITSGCFGGPSDIETRLRASEPVSLQK
Ga0208600_100001420	F072111	N/A	MKKQMILAVAIFGHLFLFLFVDSLFEAPTKWKMWAFYGSSLLSVAVWAAYVIHEDDNNPKGGAA
Ga0208600_100001422	F056323	N/A	MTRLFSLQEMADDLKLPPAVVALWAADGYIPHIMREGMPLFDPVAVGRHIAKQLNELNRIDDGNDKTTTTGAD
Ga0208600_100001443	F083667	N/A	MKTKQALTALEQALKLTAIEQPKRDDEFTTSEFADKADMHPESARRLLHRAVKEGKFALRKTSKGHYYSIK
Ga0208600_10000146	F061670	N/A	MNQHLAKAIAIYEQEGIDFQQLLTWHLCHGVVICDMDCFAMCFSAFSGNPTQAVHVDDRDTLFVTFTTGDMRGALRKYIQHYDFIAFQRSFKGSDRIRIYDIYKFYSKLKES