Scaffold Ga0207942_1005553

Overview

Basic Information

• Taxon OID: 3300020549
• Scaffold ID: Ga0207942_1005553
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 12OCT2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1816
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027416	Metagenome	194	N
F054034	Metagenome	140	N
F092047	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207942_10055531	F092047	N/A	LKNFSKIEGSEFQLSSGNKFLIGIAKDEGLHYTFGVFPLAVNGVAIIKDVIVYKLYKDILYGGDYYHGYWLESPKMKRIVKVKPENLTLKNFILELHIQTGMIC
Ga0207942_10055534	F027416	GGA	MLTIENIHKLEGCKVAAACMVWKVLRIKELDYNSENIYSIVLRTYPDNIHRIHLYLDRELKDGQYYLTSSKSDIMRVVERQDMVDVYNFLRLIKKEINRALC
Ga0207942_10055536	F054034	GGA	MLTIRTFKKLEGLVLMDGLNVESIFEFNERYSIWLSDGTNIEIDREPHWKSSTVTYYKMYIAGGTTAMTEFITIKTINTLDKMRVLLIYIKEKYKTK