Scaffold Ga0207942_1001712

Overview

Basic Information

• Taxon OID: 3300020549
• Scaffold ID: Ga0207942_1001712
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 12OCT2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4037
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005293	Metagenome / Metatranscriptome	405	Y
F012446	Metagenome / Metatranscriptome	280	N
F015582	Metagenome / Metatranscriptome	253	Y
F082581	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207942_10017121	F015582	N/A	KYLEELNHYVSTLSAPSAESVALYRAKLSMLEDIHTEIRAKYPGFMPVYDALSDPEYNQSLGKYQENTYSFSSRDLRSSSNS
Ga0207942_100171210	F005293	N/A	MTSDYVPFVPTRDDLIGFISDTYKEINGFRPRPNWSELTYNQLDQWGQRLSAEVTAYRNQEVIRNRIARGLRRAQQRAWVEKKRGYFTPATFTLGNVVNF
Ga0207942_10017122	F012446	N/A	MKKLQKEFTGNYDKVGMNKFVQIKKENGVAIYQRFNTDGTPRSYEVFIVKVVPKGASLPNGKTVEESYEQYPGANAFGKTAYDCRTIAQAEERFEQLVIKAKDSAEAKEEAAKTGVRNRGRRGTSKKVKLDMTLNKGTKFTAKFLMSVLGVSQPVLFPILKQWEKEGSIKVNGTVKGEGKGRPATEYIVV
Ga0207942_10017123	F082581	N/A	MNNVNNVSTVNATSKTVRKVGRPAKNLTLILNRSFTLKDLQILNPDVKAVTIRAAVLRGLSNGKYTKLPRNVQTGRKGKPAAIYINKSVYEANLRNLAKAKNKLVNLNESSTVTA