Scaffold Ga0208856_1003710

Overview

Basic Information

• Taxon OID: 3300020548
• Scaffold ID: Ga0208856_1003710
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 13JUL2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3461
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042293	Metagenome / Metatranscriptome	158	N
F058807	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208856_10037102	F042293	AGAAGG	LTERLISVLNITFEELKEALKRLDEVTLVELLGLQSDDLVERFDDVIEKKQEYLIKELD
Ga0208856_10037105	F058807	AGGAGG	MNVNLIKEHSNGDATYQFDLTHAEAQSLLTFGILEAIKAGLREGERLTVEGDDLEDFSHTGLSD