Scaffold Ga0208856

Basic Information
Taxon OID	3300020548 Open in IMG/M
Scaffold ID	Ga0208856_1000665 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 13JUL2012 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020548 Open in IMG/M

Scaffold ID

Ga0208856_1000665 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - 13JUL2012 deep hole epilimnion (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12198
Total Scaffold Genes	28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (14.29%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

12198

Total Scaffold Genes

28 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (14.29%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012871	Metagenome / Metatranscriptome	276	N
F019140	Metagenome / Metatranscriptome	231	N
F021113	Metagenome / Metatranscriptome	220	Y
F027518	Metagenome / Metatranscriptome	194	N
F039140	Metagenome / Metatranscriptome	164	Y
F049635	Metagenome / Metatranscriptome	146	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208856_100066514	F012871	AGG	MYGIALPEAQLLQMLHEFIGKHFRWVTFEHFNLAFELNAANELSKKCEHFGALSVVFIGDVLTHYKPHRDKANLQIQREIAESKEQESKQLKESEMAVNDDSWRRMLAEDIASYKKGKYTVIEIRAVSLMRWLEESKQITVDTFTEEEYRLCKANAKKNIYFEQQLVQSMVERMSDRKRMLLKESIHFEGMRELYKLYLSKQ
Ga0208856_100066518	F019140	N/A	MKQTPLYEALKITQDREREIINSVASYFQQGKVLGDVLLELSKRKDMNAKEKIYCSLMIGSMMTKNNEDAREQN
Ga0208856_100066520	F021113	N/A	MDKREYQPDALIVIIATSVFWMLVCLAFWNFNPKIQTEIQIQKQDSIIYYNSGEYDRLLQEEIDLYGTYRRYEDAQLTAKETYRTRRDTILVLDTIYKVDVIRLVNSCDSVIASDSLVIDNLQEQINIKDEKTNNLEETVVAYEQKTNLLSEQINTLDAEKKKLDKQKKRRNRALVVSSSVAILSTFVLSILL
Ga0208856_100066523	F039140	N/A	MKDWFQSLLSNCSKVSSKRIIAIFVVTNLILLSYIATFSEYDCPIAMYDTLALLTAGLFGGTVIEKFTKKTKNGKGTNDSENNSSGNL
Ga0208856_100066524	F027518	N/A	MNAENEIQLIHEELQNMNKKIDRIYHVLIGDDEMKIEGLVSKVQKHDKYISNQRLQVARLGGIATAAGVVGGLIVQLIIKMI
Ga0208856_10006653	F049635	N/A	MNKAIYKTPFGRLVKINFKTMKNFKTALRISDPTARLYVTHPERMRIKDFNNICLHTGLSREEVFSTFTPTKLINEENE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208856_1000665

Overview

Ecosystem & Geography

Associated Families

Sequences