Scaffold Ga0208856_1000138

Overview

Basic Information

• Taxon OID: 3300020548
• Scaffold ID: Ga0208856_1000138
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 13JUL2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31479
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (70.45%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029366	Metagenome / Metatranscriptome	188	N
F048263	Metagenome / Metatranscriptome	148	N
F087086	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208856_100013831	F048263	AGAAGG	MAFENFLQNAANFATAGLYNNLSGRDKELEQQKLAEAEAFRANPELVREAAKYDPSIMERLGNLLTGGIYGQASGMNDKLEQRDMAKQQIIQDELQRRLEERMKAYGNPPAPEPVGSELNPDRSAMPMPVEPGTLRKRNTFAGGY
Ga0208856_10001384	F087086	GGAGG	LKYRLGFSIVASFSGEHPDLCEWHPCETTLPDVLKAWPGLPVEPSEPFDSEYNYLAKEGSIPRAILDRLDDVRGETRFQICRKLKEKFPREAFWACISDVQMSGLFDRETAFKFLDSIGAGFETTQTMGTIGGPLGGWCPDFAFNVESQVLISSIRVTPVLCVVSESGDLEPVRPPSEWQWERFADMFKRFDCFDLARQGRAIDAH
Ga0208856_10001385	F029366	AGG	VSQSEPMEIAQVKEGKTGKGSKGGKIGRPEKSVSSEQKKIALRAAYLGMPEDRVAVLCGFSCGNPAGWGAYLSRHPDFKMELESARVTGEVEMQGRVLDAGNGWQGSAWLLERTRGYVARASLEHTGKGGKELSISGSLLGAFGGQSK