Scaffold Ga0208361_1010839

Overview

Basic Information

• Taxon OID: 3300020547
• Scaffold ID: Ga0208361_1010839
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 05AUG2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1359
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018323	Metagenome / Metatranscriptome	235	N
F055419	Metagenome / Metatranscriptome	138	N
F100356	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208361_10108391	F055419	N/A	MTETLAPHERLALYNLTDEEIERIEEELVKHFPREEFAEIHIEVWRTYEETGALQIHKLIEAKYPGNSRAGQRAITWFKIAKVLPHRVHRNVQH
Ga0208361_10108392	F018323	GAG	MCNTKYNYEVIELIKSLEENSVDLTSAMDTVRVLDELELPLFEHILVNQICKDLNAISTEINHDREDERVFRKIFHKVRVLKLKDSEWKFKQRAKKSTYSRNRMIEEKRLTLSQEETRELVKFERETEIINQINIEKSFEENRHLFKLIKESRFTRVGRRNWLSFYRFPDLRKITIYNEKNFLCKIEGIRRKYSRLKWSIVL
Ga0208361_10108393	F100356	AGTAG	MEYRTLKNEIELLESVQRLMNEVNTELDFNDNYMTLLELFSTMKRLKIIQPKWIFKVARTPPLEENIFFRGKKKN