NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208361_1007447

Scaffold Ga0208361_1007447


Overview

Basic Information
Taxon OID3300020547 Open in IMG/M
Scaffold IDGa0208361_1007447 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 05AUG2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1706
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029090Metagenome / Metatranscriptome189N
F059665Metagenome / Metatranscriptome133N
F075668Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0208361_10074472F059665N/AMSEEKENSKPRFSVRNGIRPSRGRWSDNDLLLFVQSLLNSVNTEENFQVNISVMEELFEAIKDFRERRPNWYFILEKIPAGSREDVGND
Ga0208361_10074473F075668N/AMSNEYSVNDVRCLVMYALNKVDTQKDFCENFRVFSGLYIAIMAFKIYEPNKQFELEKGPLLCEQNHSSFYNSRSNKSCRKINRLNQFYE
Ga0208361_10074474F029090N/AMKQKSKVVTFTPYTKTECQRLRLIMPGVPSKKQEFIRLLDRINAPSYVDLMISLLCKAVNNIAPYEDDQYNTVRYRKIYDLLSIIKNKRPTWKLAYIAQDIEAFKQKADVLNKVYRGVSFFVRQEMKQENHFRLIYETINSIDLKKGYTKNFKWFKKLKNNLKFVYGRSPKWALHYQESALPDLGNLTENDFN
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