Scaffold Ga0208361_1005019

Overview

Basic Information

• Taxon OID: 3300020547
• Scaffold ID: Ga0208361_1005019
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 05AUG2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2172
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003805	Metagenome / Metatranscriptome	467	Y
F006109	Metagenome	381	Y
F017122	Metagenome / Metatranscriptome	242	Y
F043896	Metagenome / Metatranscriptome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208361_10050193	F003805	AGAAG	MRPIEHTPESSFHKAATDQWLVSLFNKQDYRGLLEAALVLNTLHQLERTKSAWAIREAADNLADQFGMDRDSA
Ga0208361_10050194	F043896	GGAG	MSQQIAEWARQSWGEVIVDQNRADLLDKLYFWDGRDHKDHPLHSTYTGLYRKYTVN
Ga0208361_10050195	F017122	N/A	MEVVPFQEQQDPELRLGEGRSRTSSDKAQLFELKIWLPGQGAMRDLVRAESLQQAIEFAQNRYPNCKVEVPTAAAKKPKLARAKNGPRETARRRLKLVEKRNESANR
Ga0208361_10050196	F006109	AGTAG	MTRYVVMVEDRWVTAVYDSGKGIGFTRSKEDASSWVTYERAVAAARTVAQSCNCDAAVHCVDEPAYPQSWK