Scaffold Ga0208361

Basic Information
Taxon OID	3300020547 Open in IMG/M
Scaffold ID	Ga0208361_1003508 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 05AUG2010 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020547 Open in IMG/M

Scaffold ID

Ga0208361_1003508 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - 05AUG2010 deep hole epilimnion (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2724
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (25.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

2724

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (25.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026798	Metagenome / Metatranscriptome	196	N
F057099	Metagenome / Metatranscriptome	136	N
F065414	Metagenome / Metatranscriptome	127	N
F069678	Metagenome / Metatranscriptome	123	N
F073066	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208361_10035081	F069678	N/A	MSNQEQLAEGTSSTETLVNAVKTELIYKLKLCIDEINTEVDEVTYENIWSYEKMNRILANLRKLDPNWTIDGGFDKPGMWDLTDMLEGILKHRIIDIEIDDQDIENLDLESYNEFHKALIDMRKRDPRWSINGTKRNLDKPIKSRNIGLPTNSSESESENERPDDRTMTGTAHAY
Ga0208361_10035083	F065414	AGGAG	MSEPEVVINLNNVEELNIQRAKGLRKELLYIIRNRAYRQLYSLLNKVAASKKEKYNKERFKIIFKVLKRIKAMEPENHLNLASYIVSRNGV
Ga0208361_10035084	F057099	N/A	MKILRKDWELISKIAWNILNLKLEDSKKTLNLESSIDAFKLLGILNTPVFVHILISSLCRTINLIRPETREMDIVRIANRALLIMREIKKRRPNWKFQFCPNNLANSKETLKKQKSNQKYFSKISRLKNFLIINQILSQIEVDKSYEENSHLFEALKGTKREGQNSKLKWLFYHKIPELPDLIEYKGANRLK
Ga0208361_10035085	F073066	N/A	MEEDLRKIHLENLLNTLEDADKDKKVEICNIMKEMVKEETEQAKRNQNNDMTHFLNKLKELLEKTINRYSE
Ga0208361_10035088	F026798	N/A	MDKSKEKLISHNCTEESSKSKRGNNVNINKVIDENNQLTAIEKLALRRGIERVNRRRDSQQAKIIKLVNSLNDKQNFQDMNNQLKLQILFNTVLKLKRVYPSKSAMWKAPNNNTLPPYKSVRLENKLLKRGLRKKCSSYPNKEKIIENWYKLMKVQESP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208361_1003508

Overview

Ecosystem & Geography

Associated Families

Sequences