Scaffold Ga0208361

Basic Information
Taxon OID	3300020547 Open in IMG/M
Scaffold ID	Ga0208361_1003184 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 05AUG2010 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020547 Open in IMG/M

Scaffold ID

Ga0208361_1003184 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - 05AUG2010 deep hole epilimnion (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2891
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (25.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

2891

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (25.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013275	Metagenome / Metatranscriptome	272	N
F023279	Metagenome / Metatranscriptome	210	N
F028152	Metagenome / Metatranscriptome	192	N
F035195	Metagenome / Metatranscriptome	172	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208361_10031842	F028152	N/A	MDDIGEAIRSVTRIASKARPLLEPRRQEIHAVMHTNGDPYVIRACTNSLIVINEIERMQSETESVCDYLFNHYFTSEYAKEKRAVLVLQPSPVVSDKNFFSHRLESLKIQRENFVRVEKVSIGKLSVQYCLTPTFRDRLNRNLTLLHRLEDLIVDLESLYQYAKDKLEEKEKTNFEITEVRKTSPYEYKDPREVNFKIPKIKNETKVVTRVRNPTYLDFLYRP
Ga0208361_10031844	F013275	GGA	MDDFINPYKDVKLKTHLLWMTLSTIANYSSAGNISSKYVRAYLAIMVWLLVTFNSDRSGAQRLIMAFLYLEFNSIDRIIEAVNHSAIIIKAAMLCMGLSSILVNPEMNYEQAIVLTILLAAAEYIPYQWEIETLIPRAIRYFSK
Ga0208361_10031847	F023279	GAG	MADSSKENTEAIVDTIKSELAIGFKNCIDKIDTEKKVVDRYNWEIYVKMNKILHNSRRLDPQWAIEGDIGNSWSLRSILERDFKSKILNIDLSEIDSIDLEGYEELHQSLKDLRVNNPGWSINKTRRSSPILLTPTQIGLQEENTSQTN
Ga0208361_10031848	F035195	N/A	MEYRTLKTEAEVVELVQNSLNSVETEKSFEDNYEVMFKLFCAIKRLKSIRPKGTFRAVGVSFKQASTPQK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208361_1003184

Overview

Ecosystem & Geography

Associated Families

Sequences