Scaffold Ga0208361_1001667

Overview

Basic Information

• Taxon OID: 3300020547
• Scaffold ID: Ga0208361_1001667
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 05AUG2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4369
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001981	Metagenome / Metatranscriptome	608	N
F010395	Metagenome / Metatranscriptome	304	N
F011215	Metagenome / Metatranscriptome	293	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208361_10016673	F001981	N/A	MTYPTLITIPKSDICKAEIAQIAQQLTDRINDGEVNPVEAHIKLKAIVKALEATIKATEQTVADEASKHGKTFQAFGAEITLKEGSLTPNYEEDEVYADLKAQMKAREELLKMAFRQAGKSAIFDESTGEQVPVCTAKATKASIAVSFK
Ga0208361_10016674	F011215	N/A	MNLLEQMNADEFKKLLEFKEKFPLIGLDLVRTLTEKTHPIQLTLGECIDLSNAIGIPYGQYCNQIFGTFISKP
Ga0208361_10016679	F010395	N/A	MPEYHSLRPAKALTNALERLMIAIDNADLEGNHALLLEYRKACELLGYDPAMAQWNGTKEVHLSSGPDVADPVAVNYFHKLNPEE