Scaffold Ga0208361_1001625

Overview

Basic Information

• Taxon OID: 3300020547
• Scaffold ID: Ga0208361_1001625
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 05AUG2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4438
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Branchiopoda → Phyllopoda → Diplostraca → Cladocera → Anomopoda → Daphniidae → Daphnia → Daphnia pulex (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013499	Metagenome / Metatranscriptome	270	N
F016116	Metagenome / Metatranscriptome	249	N
F083681	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208361_10016252	F016116	N/A	MVEKLAKHERLALYNLTEREIDQLEEELVKQFPKEQFAETYIEMWQIHRDTKAIQIYNLIEAKYPGSHNDEKRAGIWFEIATLFPHRLHELVKP
Ga0208361_10016253	F013499	N/A	MSEALKDIRTTVSGIKGLVMMLQAYQRDLVSKGEPDPSEGSLETARSAINQLKEKIETIVGPEEPTGAEGFEVEVHESEDQSQT
Ga0208361_10016254	F083681	N/A	MNEQEGIEELDRLKRVASIRKDMCKVIQLLGYRVKVLKLQLALLPSEEKNLIRFQLDNALDETIKVVSKISHNFQKEEKKLILELSHQ