Scaffold Ga0208361

Basic Information
Taxon OID	3300020547 Open in IMG/M
Scaffold ID	Ga0208361_1001049 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 05AUG2010 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020547 Open in IMG/M

Scaffold ID

Ga0208361_1001049 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - 05AUG2010 deep hole epilimnion (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5965
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (42.86%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

5965

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (42.86%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001841	Metagenome / Metatranscriptome	627	Y
F009141	Metagenome / Metatranscriptome	322	Y
F014614	Metagenome / Metatranscriptome	261	Y
F021513	Metagenome / Metatranscriptome	218	Y
F022190	Metagenome / Metatranscriptome	215	Y
F090297	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208361_10010493	F001841	AGG	MFNPPNFFLGLMRVAAWVFWRDPVKPEPPQPKRPRKPTLGYTVGDIPYELLAVVRVSWYRKGVAYEVEEYQIEESDDAPKQFHYIVGTALRQGADVCVLTQYEPAALGVQE
Ga0208361_10010494	F090297	N/A	MYEPFQAKVSNTDLSPWYYAVGWARHSLQLQITRYKGLGLNTNYEEKQVEKLVELEQFLKMSWDQWMDSLLPDETAQEVK
Ga0208361_10010495	F022190	AGGAGG	VSQVQSIEELRFEGDHLVVDAVVDDMVVRYAQTAFEPAEWGPALCRGTLYFSDEDLIPATDAELRAMLTDRVDDWTPLDTSDWDV
Ga0208361_10010497	F014614	N/A	MTDWYADYYRQSRGYNDNDLRELRSVPRKPSTQVPDVFKHRFATPAEYDAWVEGKRRAYF
Ga0208361_10010498	F009141	N/A	MTETSMVPFYRSYLLGGKLVYLDKLSELSDSELNMLNIETMASLEEARRDYDAIENKQSEEGGSVYRRLKVAGYFQAAIKLELQN
Ga0208361_10010499	F021513	N/A	MSMYVLSESQFDQISKALEAARFALETSQHVQLDLTKPKQTIPLPAGEKIVRATSVQKAQSQSKTRVSSRKGKRGHAVLTEPKVLEIKRQLADGGKSVAKIAREFGVHVTTINCIKWNKTWKHVTLQQPAPVVVAD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208361_1001049

Overview

Ecosystem & Geography

Associated Families

Sequences