NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208853_1057246

Scaffold Ga0208853_1057246


Overview

Basic Information
Taxon OID3300020546 Open in IMG/M
Scaffold IDGa0208853_1057246 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 03OCT2011 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)598
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012962Metagenome / Metatranscriptome275Y
F033790Metagenome / Metatranscriptome176Y

Sequences

Protein IDFamilyRBSSequence
Ga0208853_10572461F012962N/ATVVVSMTNLVSNTGVVATDTTGVGTARWYLTAAGYGTDKAIFGYGYTSAAVSITNKVSNTGVVATDTIGVGTARYGLAAAGYSLS
Ga0208853_10572462F033790N/AMASNLNSEFNYRYQVIGNTPWEKLKTLKGFLVGRKRAAVLEQVADLKYKAKLAELKHLKELPALPHVILNLEAEILELESHLDDQKH

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