NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208853_1003145

Scaffold Ga0208853_1003145


Overview

Basic Information
Taxon OID3300020546 Open in IMG/M
Scaffold IDGa0208853_1003145 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 03OCT2011 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4076
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F094935Metagenome105Y
F102619Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0208853_10031451F102619N/AIPQGYYTQEKLNDFINNSISNLLNNYSVNAYSSTQGNITIPLKHIISNIDVNIEDID
Ga0208853_10031454F094935N/AMNKILDVMEDIKQNITDNQYKTIMESLMEINDTNKLSLLTSNYKLNKIICLFSWLDTKLQITDSEYACIKKTELQKYVITNYFDNCYYQNIDLVRQFLKIYFKFSTKEQEYKNEYQYVKYRNADDYT

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