Scaffold Ga0207937_1013774

Overview

Basic Information

• Taxon OID: 3300020544
• Scaffold ID: Ga0207937_1013774
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 04SEP2011 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1504
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008351	Metagenome / Metatranscriptome	334	Y
F016361	Metagenome / Metatranscriptome	247	Y
F032250	Metagenome / Metatranscriptome	180	N
F080871	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207937_10137741	F016361	N/A	PLINRVRQPINERSIQTLLQKQLAIMASIDTMTITMDPEKGKEVFQEIVSIMKELKNMEARCTC
Ga0207937_10137742	F080871	GAG	MSNPQRFSCSRSTIGFNQPEGERLTSSQLWERRNQLTTILIGFINATPNIKGIEVGGEIKRYREFCKIIETIREIDPDYHLVVAPRSEDCLRIMHYDCLCNHSHGCKCALLKKKNLS
Ga0207937_10137743	F032250	GGA	MCTVEKEKSFLKMQNEGNSSQAETGRGANTISTQVFKERDTYLQNILQIMEAVKEETVYQDNWLQYAVLHQNLMKLKEIDPNWKLVSYYEGDCIRLKHYSCSCF
Ga0207937_10137744	F008351	N/A	MDSDQETELPEKCSDELVHTVRESVEKLFSLVNTEFSRPSASDEEEDFSLLKQICEAKADILKDNPYWSAFDHTTLLSTKALGRLDWLDAEGPWDGVRNIENYKVFKEALRELRECNPNWKLEEQEVIRRIICSNCGEVKSVPEKETLFESNPAK