Scaffold Ga0207937_1005333

Overview

Basic Information

• Taxon OID: 3300020544
• Scaffold ID: Ga0207937_1005333
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 04SEP2011 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3090
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008745	Metagenome / Metatranscriptome	328	N
F023519	Metagenome / Metatranscriptome	209	N
F028153	Metagenome / Metatranscriptome	192	N
F056312	Metagenome / Metatranscriptome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207937_10053332	F056312	N/A	MSQVNQCRKRAYSSALFKITKEELSGAQNLVNRARFVWLESHELLDDWLSILKSVVEAVKDTYRASFQFLESGNFENKPSFDHLKNVLVSLTADLKVIKGWGPLVKDKKLLGDWISNIEEIVQVVEHVYCASFELLKGGGNFKNEPHLGNLRRVLISLTAELQVFKCWRLGVRACSS
Ga0207937_10053333	F023519	N/A	MSDERNRRLEEWLEDKAFLGNWIFNMENLVQAIEDAYRNLENLRNVVISLLEQLQVAESRALRMLPNLF
Ga0207937_10053334	F028153	N/A	MEVDECGTGARWPPNCEITEEELCFVRRLVNRRSFQTTKRLDDWLRIMEEVVKVLGILYRSSFRLLESNNFKDESILDLLRTVYISAMAEVDVVKGERT
Ga0207937_10053336	F008745	GGA	MSNGYQITEEERDTLVCPRLECMGAQELLDVWLLPLVLEVGGILEEAYRTSHQLFERGQGEERLLGHLQHQLMTAITELEVVQGWIASSCNMSSDKECRVLDGEEDKSEGKVLKEGSEANQSADQQADCGKQKSTSYYQWKLRHE