Scaffold Ga0207937_1004451

Overview

Basic Information

• Taxon OID: 3300020544
• Scaffold ID: Ga0207937_1004451
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 04SEP2011 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3558
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (18.18%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045530	Metagenome / Metatranscriptome	152	Y
F086589	Metagenome / Metatranscriptome	110	N
F102512	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207937_10044511	F086589	N/A	MEATLITLDTLLSNMEAELRTDMNINIPLNQEFEPSRHGDGDE
Ga0207937_100445110	F102512	N/A	MSVRKLIDEALVTYIRREMCDNIVMLCTEMKTFAEILEKFPVERLQLLKTEVIKVHNQVFGMMEEVKESFLQLV
Ga0207937_10044512	F045530	N/A	MINSITEKLEFLNNMEEFYQKVQEMLHYLGIKSPSKPDFNYYSELIKQRKQDLAFARWTIQRQYRKWFMVQMNKTGLIKMYKSKEQIRKVYNTAITEEETHKYVDEEGPPRKRFSGIYTRFN