Scaffold Ga0207937

Basic Information
Taxon OID	3300020544 Open in IMG/M
Scaffold ID	Ga0207937_1003410 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 04SEP2011 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020544 Open in IMG/M

Scaffold ID

Ga0207937_1003410 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - 04SEP2011 deep hole epilimnion (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4291
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (20.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

4291

Total Scaffold Genes

10 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (20.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F010669	Metagenome / Metatranscriptome	300	Y
F012769	Metagenome / Metatranscriptome	277	N
F015058	Metagenome / Metatranscriptome	257	N
F015181	Metagenome / Metatranscriptome	256	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207937_10034102	F012769	N/A	MQFQYPKFKVRELVKDRFDPILKEEYQEGTAIKVFKASIEVIRQSGNRLTEQHYLPYSPEEKEDMIKEVISQISEWKNRILNRRQKEKITRIDRALSKRILDILAEYLRALEETDIAKRQSKLYHVDAVAAITELQISRKFASPERKPVKRKIH
Ga0207937_10034103	F010669	N/A	MELELTRMEQSEDDLTDPSDSEDSNMGISETHWPSDPSEIKCRLHAYIAHEQEHLIELLNELEPEVQTSSANIIVEKIKRCFRCIDDITEYTTQFLRQARLIEMRDFTGFYYEIENDAKQAIRQALTVLSTIRRGNLSRLASSVKELVKELDDIRILVSKKTLEQIEETLQEYGTRRTYTLRQIERLFP
Ga0207937_10034106	F015058	N/A	MDDSWIYTLNSDIMRKEREKLKGQGIVISNLVSKCQNKTDKEKKYVKVLEFMNSIEVLVHFAEQALIWTTRSQLIPGIRIPAEAIKTLAYNDHESLKQKLGVIAVARASILRERRLTQFHSLSESGNNPVDLCETEKTIVLMKLEARLLQLEHLYKSLLEIKPVELKMFQ
Ga0207937_10034107	F015181	N/A	MNQTLLSKEDVMILDLLERVKKKENTLIEESKKQDFIREIQLENFSSEKRRFLVKLLVQNTELKLACKEEKGIANYVTEKFFRIKTLDISDEQLLQQEIVTFQQKLGRIAQLKEKLKIDKGEVANELFKTKTSERMSVILKELSTLLYETNIRLSNSGLMYNYIISKLFKLVDNGKPAYQAEAMDWTTTYEEK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0207937_1003410

Overview

Ecosystem & Geography

Associated Families

Sequences