Scaffold Ga0207937_1002839

Overview

Basic Information

• Taxon OID: 3300020544
• Scaffold ID: Ga0207937_1002839
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 04SEP2011 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4860
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (7.69%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001129	Metagenome / Metatranscriptome	768	Y
F004519	Metagenome / Metatranscriptome	434	Y
F010464	Metagenome / Metatranscriptome	303	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207937_10028391	F001129	N/A	GQGGTMEFVNGAVSGKVYDFVVVNAAATFTVLTGTGSENLLTAYNLSGASISAGIVISGRNGGKITAVTPSAGSVIGYTFL
Ga0207937_10028394	F004519	N/A	MATFRKYAFPKQSDADKVLALCTGTTAAVDLGVLDGFICYDILWEGDAPEEATQYETWPEPCGVHAFAGWEEQYTEDYHQHKSL
Ga0207937_10028396	F010464	AGG	VNLIETTIVGSVAAIVGGAVAWFTKGRVESDSLQVRQAQAVLAMWQATSESQNKELTQLRNEVVSLRQRLEEMEHTIHELQSENAKLKNLV