Scaffold Ga0207937_1001942

Overview

Basic Information

• Taxon OID: 3300020544
• Scaffold ID: Ga0207937_1001942
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 04SEP2011 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6254
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (23.53%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026798	Metagenome / Metatranscriptome	196	N
F043767	Metagenome / Metatranscriptome	155	N
F046173	Metagenome / Metatranscriptome	151	N
F057099	Metagenome / Metatranscriptome	136	N
F062460	Metagenome / Metatranscriptome	130	N
F069678	Metagenome / Metatranscriptome	123	N
F073069	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207937_10019421	F043767	N/A	GHSLLFSRHPSEANAYRRKRLWREKALEALDLLNHIKLEEMATSEHNIQVYEAIRERLKMLKTIDPERKIHQDTLVETTVIKYDCPMCLPTDDSNYEIELDS
Ga0207937_100194210	F062460	N/A	MNLEKSIIEAVTTAVKEIRQESCIKKQVKSLMKIYDAIIVKDNETSTESSLKTTRKRKRSISHE
Ga0207937_100194216	F046173	GAG	MLSLKDREIYEIVIVEIENYKSSDHDKMSKRINYAAKSPALDTILNNIFLKTAMINLELKYYYEEVIGVSKYILEQYLTGKSIGVQLYIKEIDTFYKEKLIGRLDKLKDTIRSDIPIKISEIQETHQRIRKDQDKLNKMKQDPQYNNMQQWGIQLSLERVIEIDSKLMNLTKLLNYITEKQKEQE
Ga0207937_100194217	F073069	N/A	MTSKDTVLAKREVGIKEIIENIKKRPNLPYGERKTEITKSLFLERTNKEVKQLKFKTALYLTELERGDEEVKEISNYIITHYLDEKSNTTSKDSEIKNINIFQEKLNKITNSIAKIAKEKVEVANKQLNKDMSKETRSILKENFILMYEINIKLVDLKLMYEYIITKMISAEITEGMLTEARMRKWTRFY
Ga0207937_10019422	F026798	N/A	MDKSKEKLIFHNCTEESPKSKRGNNVNINKVIDENNQLTAIEKLALRRGIERVNRRRDSQQAKIIKLVNSLNDKQNFQDMNNQLKLQILFNTVQKLKRVYPSKSAMWKAPNNNTLPPYKSVRLENKLLKRGLRKKCSSYPNKEKIIENWYKLMKVQESP
Ga0207937_10019426	F057099	N/A	MKILRKDWELISKIAWNFLNLKLEDSKKTLNLESSIDAFKLLGILNTPVFVHILISSLCRTINLIRPETREMDIVRIANRALLIMREIKKRRPNWKFQFCPNNLANSKETLKKQKSNQKYFSKISRLKNFLIINQILSQIEVDKSYEENSHLFEALKGTKREGQNSKLKWLFYHKIPELPDLIEYK
Ga0207937_10019429	F069678	N/A	MSNQEQLAEGTSSTETLVNTVKTELIYKLKLCIDEINTEVDEVTYENIWSYEKMNRILANLRKLDPNWTIDGGFDKPGMWDLTDMLEGILKHRIIDIEIDDQDIENLDLESYNEFHKALIDMRKRDPRWSINGTKRNLDKPIKSRNIGLPTNSSESENENERPDDRTMTGTAHAYR